[CIG-SHORT] [EXTERNAL] [Install Pylith On a Cluster Systemm]

[Ge Li]

Thannk you, Brad!
I wrote the module-loading into a .bash_rc file.
Although it failed the test, the code worked when I used it
to run a benchmark problem, i.e. tpv205 using PBS.

Ge
 
On 4/5/18, 10:01 PM, "Brad Aagaard" <baagaard at usgs.gov> wrote:

    Are you loading the modules manually every time you log in or are you 
    loading them in your shell startup file? I believe the tests run in a 
    separate shell so you need the environment (including the modules) to be 
    automatically set when you start a shell (e.g., via .profile or .bashrc).
    
    Regards,
    Brad
    
    
    On 4/5/18 5:05 PM, Ge Li wrote:
    > Dear Dr. Brad Aagaard,
    >
    > I’m a PhD student in Geophysics at McGill University.
    >
    > I’m trying to install Pylith -2.2.1 on a cluster system using the
    > pylith-installer package.
    >
    > *Module load:*
    >
    > module load gcc/4.9.1
    >
    > module add openmpi/1.8.3-gcc
    >
    >
    >
    > *Configure:*
    >
    > mkdir -p $HOME/build/pylith
    >
    >   $HOME/src/pylith/pylith-installer-2.2.1-0/configure \
    >
    >     --enable-python \
    >
    >     --with-make-threads=2 \
    >
    >     --prefix=$HOME/pylith
    >
    >
    >
    >
    >
    >
    >
    > However, it turned out to be not installed correctly:
    >
    >
    >
    > FAIL: testbc
    >
    > ============================================================================
    >
    > Testsuite summary for PyLith 2.2.1
    >
    > ============================================================================
    >
    > *# TOTAL: 1*
    >
    > # PASS:  0
    >
    > # SKIP:  0
    >
    > # XFAIL: 0
    >
    > # FAIL:  1
    >
    > # XPASS: 0
    >
    > # ERROR: 0
    >
    > ============================================================================
    >
    > See unittests/libtests/bc/test-suite.log
    >
    > Please report to cig-short at geodynamics.org
    > <mailto:cig-short at geodynamics.org>
    >
    >
    >
    > Please find the attached .log file. It seems to be a problem
    >
    > Related to MPI.  I’m wondering can you help me to resolve this issues
    > please?
    >
    >
    >
    >
    >
    > --
    >
    > *Ge Li*
    >
    > /Ph.D. Candidate/
    >
    > /Department of Earth & Planetary Science, /
    >
    > /McGill University/
    >
    > /3450 University Street/
    >
    > /Montreal, QC, Canada /
    >
    > /H3A 0E8/
    >
    > /ge.li2 at mail.mcgill.ca <mailto:ge.li2 at mail.mcgill.ca>/
    >
    >
    >
    >
    >