[CIG-SHORT] [EXTERNAL] [Install Pylith On a Cluster Systemm]

[Brad Aagaard]

Are you loading the modules manually every time you log in or are you 
loading them in your shell startup file? I believe the tests run in a 
separate shell so you need the environment (including the modules) to be 
automatically set when you start a shell (e.g., via .profile or .bashrc).

Regards,
Brad


On 4/5/18 5:05 PM, Ge Li wrote:
> Dear Dr. Brad Aagaard,
>
> I’m a PhD student in Geophysics at McGill University.
>
> I’m trying to install Pylith -2.2.1 on a cluster system using the
> pylith-installer package.
>
> *Module load:*
>
> module load gcc/4.9.1
>
> module add openmpi/1.8.3-gcc
>
>
>
> *Configure:*
>
> mkdir -p $HOME/build/pylith
>
>   $HOME/src/pylith/pylith-installer-2.2.1-0/configure \
>
>     --enable-python \
>
>     --with-make-threads=2 \
>
>     --prefix=$HOME/pylith
>
>
>
>
>
>
>
> However, it turned out to be not installed correctly:
>
>
>
> FAIL: testbc
>
> ============================================================================
>
> Testsuite summary for PyLith 2.2.1
>
> ============================================================================
>
> *# TOTAL: 1*
>
> # PASS:  0
>
> # SKIP:  0
>
> # XFAIL: 0
>
> # FAIL:  1
>
> # XPASS: 0
>
> # ERROR: 0
>
> ============================================================================
>
> See unittests/libtests/bc/test-suite.log
>
> Please report to cig-short at geodynamics.org
> <mailto:cig-short at geodynamics.org>
>
>
>
> Please find the attached .log file. It seems to be a problem
>
> Related to MPI.  I’m wondering can you help me to resolve this issues
> please?
>
>
>
>
>
> --
>
> *Ge Li*
>
> /Ph.D. Candidate/
>
> /Department of Earth & Planetary Science, /
>
> /McGill University/
>
> /3450 University Street/
>
> /Montreal, QC, Canada /
>
> /H3A 0E8/
>
> /ge.li2 at mail.mcgill.ca <mailto:ge.li2 at mail.mcgill.ca>/
>
>
>
>
>