[aspect-devel] Configuring deal.ii
Shangxin Liu
sxliu at vt.edu
Mon Jul 20 22:12:36 PDT 2015
Hi Scott,
It seems that you forgot to denote the path to HDF5 when you configured
deal.ii, because your HDF5 flag is OFF. Also, why don't you use gcc? From
my experience, Intel compiler indeed has some problems.
Best,
Shangxin
On Jul 21, 2015 12:41 AM, <aspect-devel-request at geodynamics.org> wrote:
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> 1. Configuring deal.ii (Scott Tarlow)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 21 Jul 2015 12:40:48 +0800
> From: Scott Tarlow <starlow at ucdavis.edu>
> To: aspect-devel at geodynamics.org
> Subject: [aspect-devel] Configuring deal.ii
> Message-ID: <2FE74120-A8AE-4EDE-8216-3C47F721912F at ucdavis.edu>
> Content-Type: text/plain; charset="utf-8"
>
> I realize the Deal.ii mailing list might be a better fit for this
> question, but I’m hoping that since there is less traffic here I might get
> a quicker response.
>
> Deal.ii configures to the point where it says "Configuring done. Proceed
> to target definitions now.”, but then fails the target definitions:
>
> -- Configuring done. Proceed to target definitions now.
> -- Setting up compat_files
> -- Setting up compat_files - Done
> -- Setting up bundled features
> -- BOOST::Iostreams will not support bz2'ed streams because libbz2 or its
> header files could not be found
> -- Setting up bundled features - Done
> -- Setting up library
> -- Setting up library - Done
> -- Setting up project configuration
> -- Setting up project configuration - Done
> -- Setting up mesh_converter
> -- Setting up mesh_converter - Done
> -- Setting up examples
> -- Setting up examples - Done
> -- Setting up quick_tests in DEBUG mode
> -- Setting up quick_tests in DEBUG mode - Done
> -- Setting up testsuite
> -- Setting up testsuite - Done
> ###
> #
> # deal.II configuration:
> # CMAKE_BUILD_TYPE: DebugRelease
> # BUILD_SHARED_LIBS: ON
> # CMAKE_INSTALL_PREFIX: /home/starlow/build
> # CMAKE_SOURCE_DIR: /home/starlow/dealii-8.2.1 (Version 8.2.1)
> # CMAKE_BINARY_DIR: /home/starlow/build
> # CMAKE_CXX_COMPILER: GNU 4.4.7 on platform Linux x86_64
> # /usr/bin/c++
> #
> # Configured Features (DEAL_II_ALLOW_BUNDLED = ON,
> DEAL_II_ALLOW_AUTODETECTION = ON):
> # ( DEAL_II_WITH_64BIT_INDICES = OFF )
> # ( DEAL_II_WITH_ARPACK = OFF )
> # DEAL_II_WITH_BOOST set up with bundled packages
> # DEAL_II_WITH_BZIP2 set up with external dependencies
> # ( DEAL_II_WITH_CXX11 = OFF )
> # ( DEAL_II_WITH_HDF5 = OFF )
> # DEAL_II_WITH_LAPACK set up with external dependencies
> # ( DEAL_II_WITH_METIS = OFF )
> # DEAL_II_WITH_MPI set up with external dependencies
> # ( DEAL_II_WITH_MUMPS = OFF )
> # DEAL_II_WITH_MUPARSER set up with bundled packages
> # ( DEAL_II_WITH_NETCDF = OFF )
> # ( DEAL_II_WITH_OPENCASCADE = OFF )
> # DEAL_II_WITH_P4EST set up with external dependencies
> # ( DEAL_II_WITH_PETSC = OFF )
> # ( DEAL_II_WITH_SLEPC = OFF )
> # DEAL_II_WITH_THREADS set up with bundled packages
> # DEAL_II_WITH_TRILINOS set up with external dependencies
> # DEAL_II_WITH_UMFPACK set up with bundled packages
> # DEAL_II_WITH_ZLIB set up with external dependencies
> #
> # Component configuration:
> # DEAL_II_COMPONENT_COMPAT_FILES
> # ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
> # DEAL_II_COMPONENT_EXAMPLES
> # DEAL_II_COMPONENT_MESH_CONVERTER
> # ( DEAL_II_COMPONENT_PACKAGE = OFF )
> # ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
> #
> # Detailed information (compiler flags, feature configuration) can be
> found in detailed.log
> #
> # Run $ make info to print a help message with a list of top level
> targets
> #
> ###
> -- Configuring incomplete, errors occurred!
> See also "/home/starlow/build/CMakeFiles/CMakeOutput.log".
> See also "/home/starlow/build/CMakeFiles/CMakeError.log".
>
>
> So I’m not really sure what the error is. I’ve attached CMakeOutput.log
> and CMakeError.log.
>
> If it helps, the cluster I’m trying to install uses intel’s compiler,
> which has caused some problems (but I’ve seemingly worked around them)
> building trilinos.
>
>
> thanks for taking a look,
>
>
>
> Scott Tarlow
> Graduate Student
> UC Davis, Earth and Planetary Sciences
>
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